Load a GMT (Gene Matrix Transposed) file into a [`VennDataset-class`]

Each line is one set: `set_name<TAB>description<TAB>item1<TAB>item2<TAB>...`. Lines with fewer than 3 tab-separated columns or empty set names are skipped.

Usage

load_gmt(path)

Arguments

path

Path to the .gmt file.

Value

A [`VennDataset-class`].

Examples

tmp <- tempfile(fileext = ".gmt")
writeLines(c("SetA\tdesc\tGENE1\tGENE2\tGENE3",
             "SetB\tdesc\tGENE2\tGENE3\tGENE4"), tmp)
ds <- load_gmt(tmp)
ds@set_names
#> [1] "SetA" "SetB"